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Journal of Big Data

Table 1 Bioinformatics tools for medical image processing and analysis

From: Big data in healthcare: management, analysis and future prospects

Tools/softwares VTK ITK DTI-TK ITK-Snap FSL SPM NiftyReg NiftySeg NifttSim NiftRec ANTS GIMIAS elastix MIA MITK Camino OsiriX MRIcron IMOD
Input image support
 MRI   x x   x x x x x x x x x    x x x x
 Ultrasound    x     x x x x   x x       
 X-ray    x     x x x    x x       
 fMRI      x x      x x x    x   x  
 PET    x    x       x x       
 CT-Scan       x     x   x x       
 EEG    x    x       x x       
 Mammogram             x x    x    
 Graphical user interface x x x x x x x x x x x x x x x x x x x
Functions
 Generic x x    x x   x    x x x    x   x  
 Registration   x x    x x x    x x x   x x x   x
 Segmentation   x     x   x x x   x x x x x x   
 Visualization x    x    x   x x   x x   x x x x x
 Reconstruction x   x x x x    x x x x x x      x
 Simulation x   x x x     x x   x x x      
 Diffusion x   x    x     x   x x   x x    
  1. VTK (https://vtk.org/), ITK (https://itk.org/), DTI-TK (http://dti-tk.sourceforge.net/pmwiki/pmwiki.php), ITK-Snap (http://www.itksnap.org/pmwiki/pmwiki.php), FSL (https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/), SPM (https://www.fil.ion.ucl.ac.uk/spm/), NiftyReg (http://sourceforge.net/projects/niftyreg), NiftySeg (http://sourceforge.net/projects/niftyseg), NifttSim (http://sourceforge.net/projects/niftysim), NiftRec (http://sourceforge.net/projects/niftyrec), ANTS (http://picsl.upenn.edu/software/ants/), GIMIAS (http://www.gimias.org/), elastix (http://elastix.isi.uu.nl/), MIA (http://mia.sourceforge.net/), MITK (http://www.mitk.org/wiki), Camino (http://web4.cs.ucl.ac.uk/research/medic/camino/pmwiki/pmwiki.php?n=Main.HomePage), IMOD (https://omictools.com/imod-tool), MRICron (https://omictools.com/mricron-tool), OstriX (https://omictools.com/osirix-tool)
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