Tools/softwares
|
VTK
|
ITK
|
DTI-TK
|
ITK-Snap
|
FSL
|
SPM
|
NiftyReg
|
NiftySeg
|
NifttSim
|
NiftRec
|
ANTS
|
GIMIAS
|
elastix
|
MIA
|
MITK
|
Camino
|
OsiriX
|
MRIcron
|
IMOD
|
---|
Input image support
|
MRI
| |
x
|
x
| |
x
|
x
|
x
|
x
|
x
|
x
|
x
|
x
|
x
| | |
x
|
x
|
x
|
x
|
Ultrasound
| | |
x
| | | |
x
|
x
|
x
|
x
| |
x
|
x
| | | | | | |
X-ray
| | |
x
| | | |
x
|
x
|
x
| | |
x
|
x
| | | | | | |
fMRI
| | | | |
x
|
x
| | | | |
x
|
x
|
x
| | |
x
| |
x
| |
PET
| | |
x
| | |
x
| | | | | |
x
|
x
| | | | | | |
CT-Scan
| | | | | |
x
| | | |
x
| |
x
|
x
| | | | | | |
EEG
| | |
x
| | |
x
| | | | | |
x
|
x
| | | | | | |
Mammogram
| | | | | | | | | | | |
x
|
x
| | |
x
| | | |
Graphical user interface
|
x
|
x
|
x
|
x
|
x
|
x
|
x
|
x
|
x
|
x
|
x
|
x
|
x
|
x
|
x
|
x
|
x
|
x
|
x
|
Functions
|
Generic
|
x
|
x
| | |
x
|
x
| |
x
| | |
x
|
x
|
x
| | |
x
| |
x
| |
Registration
| |
x
|
x
| | |
x
|
x
|
x
| | |
x
|
x
|
x
| |
x
|
x
|
x
| |
x
|
Segmentation
| |
x
| | | |
x
| |
x
|
x
|
x
| |
x
|
x
|
x
|
x
|
x
|
x
| | |
Visualization
|
x
| | |
x
| | |
x
| |
x
|
x
| |
x
|
x
| |
x
|
x
|
x
|
x
|
x
|
Reconstruction
|
x
| |
x
|
x
|
x
|
x
| | |
x
|
x
|
x
|
x
|
x
|
x
| | | | |
x
|
Simulation
|
x
| |
x
|
x
|
x
| | | |
x
|
x
| |
x
|
x
|
x
| | | | | |
Diffusion
|
x
| |
x
| | |
x
| | | |
x
| |
x
|
x
| |
x
|
x
| | | |
- VTK (https://vtk.org/), ITK (https://itk.org/), DTI-TK (http://dti-tk.sourceforge.net/pmwiki/pmwiki.php), ITK-Snap (http://www.itksnap.org/pmwiki/pmwiki.php), FSL (https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/), SPM (https://www.fil.ion.ucl.ac.uk/spm/), NiftyReg (http://sourceforge.net/projects/niftyreg), NiftySeg (http://sourceforge.net/projects/niftyseg), NifttSim (http://sourceforge.net/projects/niftysim), NiftRec (http://sourceforge.net/projects/niftyrec), ANTS (http://picsl.upenn.edu/software/ants/), GIMIAS (http://www.gimias.org/), elastix (http://elastix.isi.uu.nl/), MIA (http://mia.sourceforge.net/), MITK (http://www.mitk.org/wiki), Camino (http://web4.cs.ucl.ac.uk/research/medic/camino/pmwiki/pmwiki.php?n=Main.HomePage), IMOD (https://omictools.com/imod-tool), MRICron (https://omictools.com/mricron-tool), OstriX (https://omictools.com/osirix-tool)