Table 1 Performance of HCudaBLAST compared to generic BLAST algorithm on Hadoop with 2M sequences (BoH: BLAST on Hadoop, HCB: HCudaBLAST)
From: HCudaBLAST: an implementation of BLAST on Hadoop and Cuda
Query length | Database hits | BoH runtime (min) | HCB runtime (min) | Speed up |
|---|---|---|---|---|
1000 | 148256049 | 12.43 | 7.33 | 1.69 |
2000 | 255375521 | 14.39 | 8.89 | 1.61 |
3000 | 593191597 | 15.69 | 9.99 | 1.57 |
4000 | 671434422 | 17.88 | 12.64 | 1.42 |
5000 | 829210234 | 19.32 | 14.88 | 1.30 |