From: A novel feature extraction method based on highly expressed SNPs for tissue-specific gene prediction
(a) Adipose subcutaneous tissue | |||||||||
---|---|---|---|---|---|---|---|---|---|
k-mer size | Feature size | Feature set | |||||||
Forward | Reverse | ||||||||
Acc | F1 | Time | Mem | Acc | F1 | Time | Mem | ||
2 | [6, 7, 8] | 0.25 | 0.19 | 104 | 1906 | 0.26 | 0.20 | 105 | 1905 |
[7, 8, 9] | 0.38 | 0.31 | 102 | 1907 | 0.39 | 0.32 | 102 | 1907 | |
[8, 9, 10] | 0.51 | 0.44 | 101 | 1908 | 0.51 | 0.44 | 104 | 1907 | |
[9, 10, 11] | 0.61 | 0.54 | 109 | 1908 | 0.61 | 0.54 | 102 | 1906 | |
[10, 11, 12] | 0.68 | 0.62 | 112 | 1907 | 0.68 | 0.61 | 106 | 1906 | |
3 | [6, 7, 8] | 0.84 | 0.80 | 103 | 1923 | 0.85 | 0.82 | 104 | 1924 |
[7, 8, 9] | 0.93 | 0.91 | 103 | 1924 | 0.94 | 0.93 | 105 | 1924 | |
[8, 9, 10] | 0.97 | 0.97 | 104 | 1924 | 0.98 | 0.97 | 102 | 1924 | |
[9, 10, 11] | 0.99 | 0.99 | 105 | 1925 | 0.99 | 0.99 | 106 | 1925 | |
[10, 11, 12] | 0.99 | 0.99 | 106 | 1926 | 1.00 | 0.99 | 106 | 1925 | |
4 | [6, 7, 8] | 0.97 | 0.96 | 103 | 1986 | 0.97 | 0.97 | 105 | 1987 |
[7, 8, 9] | 0.99 | 0.99 | 104 | 1987 | 0.99 | 0.99 | 106 | 1988 | |
[8, 9, 10] | 1.00 | 1.00 | 105 | 1988 | 1.00 | 1.00 | 104 | 1988 | |
[9, 10, 11] | 1.00 | 1.00 | 106 | 1990 | 1.00 | 1.00 | 106 | 1990 | |
[10, 11, 12] | 1.00 | 1.00 | 108 | 1990 | 1.00 | 1.00 | 108 | 1990 | |
5 | [6, 7, 8] | 0.99 | 0.99 | 106 | 2242 | 0.99 | 0.99 | 104 | 2242 |
[7, 8, 9] | 1.00 | 1.00 | 107 | 2244 | 1.00 | 1.00 | 106 | 2243 | |
[8, 9, 10] | 1.00 | 1.00 | 106 | 2245 | 1.00 | 1.00 | 107 | 2245 | |
[9, 10, 11] | 1.00 | 1.00 | 109 | 2245 | 1.00 | 1.00 | 109 | 2245 | |
[10, 11, 12] | 1.00 | 1.00 | 109 | 2247 | 1.00 | 1.00 | 110 | 2246 |
(b) Brain amygdala tissue | |||||||||
---|---|---|---|---|---|---|---|---|---|
k-mer size | Feature size | Feature set | |||||||
Forward | Reverse | ||||||||
Acc | F1 | Time | Mem | Acc | F1 | Time | Mem | ||
2 | [6, 7, 8] | 0.58 | 0.51 | 15 | 196 | 0.59 | 0.52 | 15 | 196 |
[7, 8, 9] | 0.70 | 0.63 | 13 | 196 | 0.69 | 0.63 | 13 | 196 | |
[8, 9, 10] | 0.76 | 0.71 | 13 | 196 | 0.77 | 0.72 | 13 | 196 | |
[9, 10, 11] | 0.81 | 0.76 | 13 | 196 | 0.81 | 0.76 | 13 | 196 | |
[10, 11, 12] | 0.84 | 0.79 | 13 | 196 | 0.84 | 0.80 | 14 | 196 | |
3 | [6, 7, 8] | 0.97 | 0.96 | 13 | 199 | 0.97 | 0.96 | 13 | 199 |
[7, 8, 9] | 0.99 | 0.98 | 13 | 199 | 0.99 | 0.99 | 13 | 199 | |
[8, 9, 10] | 1.00 | 0.99 | 13 | 199 | 1.00 | 0.99 | 13 | 199 | |
[9, 10, 11] | 1.00 | 1.00 | 13 | 199 | 1.00 | 1.00 | 13 | 199 | |
[10, 11, 12] | 1.00 | 1.00 | 13 | 199 | 1.00 | 1.00 | 13 | 199 | |
4 | [6, 7, 8] | 0.99 | 0.99 | 13 | 210 | 1.00 | 0.99 | 13 | 210 |
[7, 8, 9] | 1.00 | 1.00 | 14 | 210 | 1.00 | 1.00 | 13 | 210 | |
[8, 9, 10] | 1.00 | 1.00 | 13 | 211 | 1.00 | 1.00 | 14 | 211 | |
[9, 10, 11] | 1.00 | 1.00 | 13 | 211 | 1.00 | 1.00 | 13 | 211 | |
[10, 11, 12] | 1.00 | 1.00 | 13 | 211 | 1.00 | 1.00 | 14 | 211 | |
5 | [6, 7, 8] | 1.00 | 1.00 | 13 | 256 | 1.00 | 1.00 | 14 | 256 |
[7, 8, 9] | 1.00 | 1.00 | 14 | 256 | 1.00 | 1.00 | 14 | 256 | |
[8, 9, 10] | 1.00 | 1.00 | 14 | 256 | 1.00 | 1.00 | 14 | 256 | |
[9, 10, 11] | 1.00 | 1.00 | 14 | 256 | 1.00 | 1.00 | 14 | 256 | |
[10, 11, 12] | 1.00 | 1.00 | 14 | 270 | 1.00 | 1.00 | 14 | 256 |