A novel feature extraction method based on highly expressed SNPs for tissue-specific gene prediction

Journal of Big Data

Table 1 The 49 human tissues and their tissue-specific genes with at least 25 SNPs. A total of 305,572 genes is listed

No.	Tissue	Gene	No.	Tissue	Gene
1	Adipose subcutaneous	10,884	26	Esophagus mucosa	10,143
2	Adipose visceral omentum	8295	27	Esophagus muscularis	9862
3	Adrenal gland	4878	28	Heart atrial appendage	7142
4	Artery aorta	8533	29	Heart left ventricle	6286
5	Artery coronary	3625	30	Kidney cortex	615
6	Artery tibial	10,730	31	Liver	3287
7	Brain amygdala	1925	32	Lung	9536
8	Brain anterior cingulate cortex	2961	33	Minor salivary gland	2418
9	Brain caudate basal ganglia	4779	34	Muscle skeletal	9467
10	Brain cerebellar hemisphere	5947	35	Nerve tibial	12,662
11	Brain cerebellum	7204	36	Ovary	3105
12	Brain cortex	5418	37	Pancreas	6275
13	Brain frontal cortex	4179	38	Pituitary	5692
14	Brain hippocampus	3007	39	Prostate	4146
15	Brain hypothalamus	3050	40	Skin not sun exposed suprapubic	10,416
16	Brain nucleus accumbens basal ganglia	4722	41	Skin sun exposed lower leg	11,829
17	Brain putamen basal ganglia	3877	42	Small intestine terminal ileum	3481
18	Brain spinal cord cervical	2390	43	Spleen	6394
19	Brain substantia nigra	1646	44	Stomach	5344
20	Breast mammary	7003	45	Testis	12,612
21	Cells cultured fibroblasts	10,845	46	Thyroid	12,805
22	Cells EBV transformed lymphocytes	2551	47	Uterus	1817
23	Colon sigmoid	6688	48	Vagina	1816
24	Colon transverse	7417	49	Whole blood	8940
25	Esophagus gastroesophageal junction	6928