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Table 2 StreamAligner performance (times reported in seconds)

From: StreamAligner: a streaming based sequence aligner on Apache Spark

Reference genome Query genome StreamAligner SparkBWA Speedup
S_suis 100 k 18 81 4.5×
chr1 AML 140 54 0.38×
chr21 AML 147 44 0.3×
hg19 AML 87 40 0.46×
chr1 BRL 247 259 1.04×
chr21 BRL 315 322 1.02×
hg19 BRL 121 191 1.57×
chr1 ANL 228 3189 13.98×
chr21 ANL 1222 2403 1.96×
hg19 ANL 337 3369 9.97×
chr1 ERR000589 532 1201 2.25×
chr21 ERR000589 178 407 2.28×
hg19 ERR000589 909 2202 2.42×
chr1 SRR015390 267 1093 4.09×
chr21 SRR015390 191 522 2.73×
hg19 SRR015390 568 2119 3.73×
chr1 SRR062634 779 1819 2.33×
chr21 SRR062634 624 1485 2.37×
hg19 SRR062634 1031 2321 2.25×
chr1 SRR642648 1449 2939 2.02×
chr21 SRR642648 1332 2500 1.87×
hg19 SRR642648 1892 3563 1.88×