Table 1 Query datasets description
From: StreamAligner: a streaming based sequence aligner on Apache Spark
Query genome | Number of reads | Bp per read | Size (MB) |
|---|---|---|---|
100k.fa | 100,000 | 36 | 4.18 |
BRL.fastq | 3,958,076 | 100 | 1100 |
AML.fastq | 304,745 | 150 | 112 |
ANL.fastq | 2,986,312 | 400 | 2600 |
NA12750/ERR000589 | \(12*10^{6}\) | 51 | 3400 |
HG00096/SRR015390 | \(15.9*10^{6}\) | 51 | 5100 |
HG00096/SRR062634 | \(24.1*10^{6}\) | 100 | 11,800 |
150140/SRR642648 | \(98.8*10^{6}\) | 100 | 48,300 |