From: HCudaBLAST: an implementation of BLAST on Hadoop and Cuda
Query length | Database hits | BoH runtime (min) | HCB runtime (min) | Speed up |
---|---|---|---|---|
1000 | 2943252019 | 16.82 | 10.25 | 1.64 |
2000 | 3560375127 | 17.88 | 12.57 | 1.42 |
3000 | 4298763021 | 19.89 | 14.22 | 1.39 |
4000 | 5878829120 | 22.23 | 18.24 | 1.21 |
5000 | 7112991378 | 25.55 | 20.78 | 1.23 |