Gene selection via improved nuclear reaction optimization algorithm for cancer classification in high-dimensional data

El-Mageed, Amr A. Abd; Elkhouli, Ahmed E.; Abohany, Amr A.; Gafar, Mona

doi:10.1186/s40537-024-00902-z

Journal of Big Data

Table 14 The number of extracted features by the proposed RBNRO-DE and its peers for training the k-NN

From: Gene selection via improved nuclear reaction optimization algorithm for cancer classification in high-dimensional data

Benchmark	Metric	RBNRO-DE	BSSA	BABC	BPSO	BBA	BGWO	BWOA
BLCA	Features number	147	210	238	235	196	218	229
BLCA	STD	012.2759	020.5005	019.0668	017.1231	023.8320	018.2740	019.4349
CESC	Features number	125	195	213	225	194	200	214
CESC	STD	006.5072	011.1676	005.3071	003.1107	009.6552	009.3014	008.3526
CHOL	Features number	125	195	213	225	194	200	214
CHOL	STD	006.5072	011.1676	005.3071	003.1107	009.6552	009.3014	008.3526
COAD	Features number	125	195	213	225	194	200	214
COAD	STD	006.5072	011.1676	005.3071	003.1107	009.6552	009.3014	008.3526
ESCA	Features number	125	195	213	225	194	200	214
ESCA	STD	006.5072	011.1676	005.3071	003.1107	009.6552	009.3014	008.3526
GBM	Features number	125	195	213	225	194	200	213
GBM	STD	006.5201	011.1676	005.4017	003.1107	009.6552	009.0478	008.5052
HNSC	Features number	139	203	223	227	203	211	218
HNSC	STD	014.6040	009.2619	011.9564	003.9131	013.2363	007.6528	007.4139
KICH	Features number	125	195	213	225	194	200	214
KICH	STD	006.5072	011.1676	005.3071	003.1107	009.6552	009.3014	008.3526
KIRC	Features number	153	201	220	228	192	210	216
KIRC	STD	027.5450	009.6266	011.7362	008.2710	008.7334	014.0754	010.1085
KIRP	Features number	125	195	213	225	194	200	214
KIRP	STD	006.5072	011.1676	005.3071	003.1107	009.6552	009.3014	008.3526
LIHC	Features number	125	197	214	226	193	201	212
LIHC	STD	007.9387	007.7803	005.2248	003.3599	009.1664	010.0249	009.3500
LUAD	Features number	130	197	216	223	191	205	213
LUAD	STD	008.1948	008.9805	004.7380	006.1586	008.6065	010.5715	006.1465
LUSC	Features number	131	199	216	223	189	204	213
LUSC	STD	007.3182	008.7702	003.5448	004.8854	010.6856	007.1954	009.7011
PAAD	Features number	125	195	213	225	194	200	214
PAAD	STD	006.5072	011.1676	005.3071	003.1107	009.6552	009.3014	008.3526
PCPG	Features number	125	195	213	225	194	200	214
PCPG	STD	006.5072	011.1676	005.3071	003.1107	009.6552	009.3014	008.3526
READ	Features number	125	195	213	225	194	200	214
READ	STD	006.5072	011.1676	005.3071	003.1107	009.6552	009.3014	008.3526
SARC	Features number	125	195	213	225	194	200	214
SARC	STD	006.5072	011.1676	005.3071	003.1107	009.6552	009.3014	008.3526
SKCM	Features number	125	195	213	225	194	200	214
SKCM	STD	006.5072	011.1676	005.3071	003.1107	009.6552	009.3014	008.3526
STAD	Features number	144	215	236	243	188	221	235
STAD	STD	013.0348	018.4264	013.9429	016.2897	010.2689	019.2425	022.6314
THCA	Features number	125	195	213	225	194	200	214
THCA	STD	006.8977	011.2002	005.2890	003.0955	009.6552	009.8098	008.5935
THYM	Features number	125	195	213	225	194	200	214
THYM	STD	006.5072	011.1676	005.3071	003.1107	009.6552	009.3014	008.3526
UCEC	Features number	151	216	238	236	242	220	231
UCEC	STD	016.5202	015.4128	015.8235	010.1127	034.1306	011.2574	011.2706
Ranking	\(\text {W\|T\|L}\)	\(\mathbf {22\|0\|0}\)	0\|0\|22	0\|0\|22	0\|0\|22	0\|0\|22	0\|0\|22	0\|0\|22

Benchmark	Metric	BGOA	BSFO	BHHO	BBSA	BASO	BHGSO
BLCA	Features number	226	219	195	228	232	237
BLCA	STD	014.8147	011.4022	013.1673	014.5967	018.9006	014.1368
CESC	Features number	213	182	186	213	216	233
CESC	STD	005.6588	005.1941	006.4890	005.8784	006.0241	005.6373
CHOL	Features number	213	182	186	211	212	233
CHOL	STD	005.6588	005.1941	006.4890	006.4446	005.0773	004.3626
COAD	Features number	213	182	186	211	212	233
COAD	STD	005.6588	005.1941	006.4890	006.4446	005.0773	004.3626
ESCA	Features number	213	182	186	212	219	230
ESCA	STD	005.6588	005.1941	006.4890	006.9363	004.6814	007.6373
GBM	Features number	213	181	185	211	212	233
GBM	STD	005.7236	006.1079	006.4015	006.4446	004.9872	004.3855
HNSC	Features number	221	195	196	220	224	241
HNSC	STD	005.3150	019.4685	008.2621	007.7075	005.6832	006.2125
KICH	Features number	213	182	186	211	212	233
KICH	STD	005.6588	005.1941	006.4890	006.4446	005.0773	004.3626
KIRC	Features number	222	223	193	219	219	234
KIRC	STD	015.1793	027.3403	017.3569	013.8249	012.7844	004.2059
KIRP	Features number	213	182	186	211	212	233
KIRP	STD	005.6588	005.1941	006.4890	006.4446	005.0773	004.3626
LIHC	Features number	214	181	189	213	212	232
LIHC	STD	004.8886	004.6332	006.8903	005.6941	004.8061	004.9711
LUAD	Features number	216	181	192	215	218	238
LUAD	STD	004.4297	005.1339	008.5025	006.1261	004.7123	004.9420
LUSC	Features number	216	183	195	216	215	241
LUSC	STD	003.4398	005.1635	006.4049	005.5422	006.1627	004.6596
PAAD	Features number	213	182	186	211	212	233
PAAD	STD	005.6588	005.1941	006.4890	006.4446	005.0773	004.3626
PCPG	Features number	213	182	186	211	212	233
PCPG	STD	005.6588	005.1941	006.4890	006.4446	005.0773	004.3626
READ	Features number	213	182	186	211	212	233
READ	STD	005.6588	005.1941	006.4890	006.4446	005.0773	004.3626
SARC	Features number	213	182	186	213	216	232
SARC	STD	005.6588	005.1941	006.4890	006.3000	004.9778	003.4000
SKCM	Features number	213	182	186	211	212	233
SKCM	STD	005.6588	005.1941	006.4890	006.4446	005.0773	004.3626
STAD	Features number	233	216	202	231	237	237
STAD	STD	014.2471	012.5628	013.9951	014.0445	015.3500	005.8622
THCA	Features number	213	182	187	211	212	232
THCA	STD	005.6886	005.2624	005.8750	006.4446	005.0773	004.7843
THYM	Features number	213	182	186	211	212	233
THYM	STD	005.6588	005.1941	006.4890	006.4446	005.0773	004.3626
UCEC	Features number	229	215	207	228	235	267
UCEC	STD	011.6593	029.4144	010.8403	010.3170	006.1427	030.5487
Ranking	\(\text {W\|T\|L}\)	0\|0\|22	0\|0\|22	0\|0\|22	0\|0\|22	0\|0\|22	0\|0\|22

Back to article page