Gene selection via improved nuclear reaction optimization algorithm for cancer classification in high-dimensional data

El-Mageed, Amr A. Abd; Elkhouli, Ahmed E.; Abohany, Amr A.; Gafar, Mona

doi:10.1186/s40537-024-00902-z

Journal of Big Data

Table 13 The proposed RBNRO-DE scores with k-NN and its peers in terms of mean values of fitness

From: Gene selection via improved nuclear reaction optimization algorithm for cancer classification in high-dimensional data

Benchmark	Metric	RBNRO-DE	BSSA	BABC	BPSO	BBA	BGWO	BWOA
BLCA	Mean	0.0029	0.0111	0.0071	0.0112	0.0147	0.0094	0.0107
BLCA	STD	0.0002	0.0053	0.0044	0.0054	0.0024	0.0055	0.0054
CESC	Mean	0.0185	0.0199	0.0202	0.0205	0.0198	0.0200	0.0202
CESC	STD	0.0001	0.0002	0.0001	0.0001	0.0002	0.0002	0.0002
CHOL	Mean	0.0025	0.0039	0.0043	0.0045	0.0039	0.0040	0.0043
CHOL	STD	0.0001	0.0002	0.0001	0.0001	0.0002	0.0002	0.0002
COAD	Mean	0.0025	0.0039	0.0043	0.0045	0.0039	0.0040	0.0043
COAD	STD	0.0001	0.0002	0.0001	0.0001	0.0002	0.0002	0.0002
ESCA	Mean	0.0279	0.0293	0.0296	0.0299	0.0293	0.0294	0.0297
ESCA	STD	0.0001	0.0002	0.0001	0.0001	0.0002	0.0002	0.0002
GBM	Mean	0.0025	0.0039	0.0043	0.0045	0.0039	0.0040	0.0043
GBM	STD	0.0001	0.0002	0.0001	0.0001	0.0002	0.0002	0.0002
HNSC	Mean	0.0089	0.0125	0.0129	0.0133	0.0128	0.0124	0.0131
HNSC	STD	0.0038	0.0016	0.0014	0.0001	0.0003	0.0021	0.0001
KICH	Mean	0.0025	0.0039	0.0043	0.0045	0.0039	0.0040	0.0043
KICH	STD	0.0001	0.0002	0.0001	0.0001	0.0002	0.0002	0.0002
KIRC	Mean	0.0047	0.0111	0.0104	0.0122	0.0120	0.0102	0.0120
KIRC	STD	0.0030	0.0027	0.0034	0.0019	0.0002	0.0034	0.0019
KIRP	Mean	0.0025	0.0039	0.0043	0.0045	0.0039	0.0040	0.0043
KIRP	STD	0.0001	0.0002	0.0001	0.0001	0.0002	0.0002	0.0002
LIHC	Mean	0.0025	0.0039	0.0043	0.0045	0.0039	0.0040	0.0042
LIHC	STD	0.0002	0.0002	0.0001	0.0001	0.0002	0.0002	0.0002
LUAD	Mean	0.0112	0.0126	0.0129	0.0131	0.0124	0.0127	0.0129
LUAD	STD	0.0002	0.0002	0.0001	0.0001	0.0002	0.0002	0.0001
LUSC	Mean	0.0026	0.0040	0.0043	0.0045	0.0038	0.0041	0.0043
LUSC	STD	0.0001	0.0002	0.0001	0.0001	0.0002	0.0001	0.0002
PAAD	Mean	0.0025	0.0039	0.0043	0.0045	0.0039	0.0040	0.0043
PAAD	STD	0.0001	0.0002	0.0001	0.0001	0.0002	0.0002	0.0002
PCPG	Mean	0.0025	0.0039	0.0043	0.0045	0.0039	0.0040	0.0043
PCPG	STD	0.0001	0.0002	0.0001	0.0001	0.0002	0.0002	0.0002
READ	Mean	0.0025	0.0039	0.0043	0.0045	0.0039	0.0040	0.0043
READ	STD	0.0001	0.0002	0.0001	0.0001	0.0002	0.0002	0.0002
SARC	Mean	0.0212	0.0226	0.0229	0.0232	0.0226	0.0227	0.0230
SARC	STD	0.0001	0.0002	0.0001	0.0001	0.0002	0.0002	0.0002
SKCM	Mean	0.0025	0.0039	0.0043	0.0045	0.0039	0.0040	0.0043
SKCM	STD	0.0001	0.0002	0.0001	0.0001	0.0002	0.0002	0.0002
STAD	Mean	0.0029	0.0083	0.0062	0.0093	0.0147	0.0081	0.0095
STAD	STD	0.0003	0.0050	0.0036	0.0051	0.0002	0.0050	0.0051
THCA	Mean	0.0025	0.0039	0.0043	0.0045	0.0039	0.0040	0.0043
THCA	STD	0.0001	0.0002	0.0001	0.0001	0.0002	0.0002	0.0002
THYM	Mean	0.0025	0.0039	0.0043	0.0045	0.0039	0.0040	0.0043
THYM	STD	0.0001	0.0002	0.0001	0.0001	0.0002	0.0002	0.0002
UCEC	Mean	0.0038	0.0192	0.0171	0.0278	0.0354	0.0201	0.0277
UCEC	STD	0.0044	0.0120	0.0122	0.0061	0.0100	0.0119	0.0062
Ranking	\(\text {W\|T\|L}\)	\(\mathbf {22\|0\|0}\)	0\|0\|22	0\|0\|22	0\|0\|22	0\|0\|22	0\|0\|22	0\|0\|22

Benchmark	Metric	BGOA	BSFO	BHHO	BBSA	BASO	BHGSO
BLCA	Mean	0.0114	0.0044	0.0131	0.0103	0.0108	0.0159
BLCA	STD	0.0054	0.0002	0.0044	0.0055	0.0054	0.0018
CESC	Mean	0.0202	0.0196	0.0197	0.0202	0.0203	0.0206
CESC	STD	0.0001	0.0001	0.0001	0.0001	0.0001	0.0001
CHOL	Mean	0.0043	0.0036	0.0037	0.0042	0.0042	0.0047
CHOL	STD	0.0001	0.0001	0.0001	0.0001	0.0001	0.0001
COAD	Mean	0.0043	0.0036	0.0037	0.0042	0.0042	0.0047
COAD	STD	0.0001	0.0001	0.0001	0.0001	0.0001	0.0001
ESCA	Mean	0.0296	0.0290	0.0291	0.0296	0.0298	0.0300
ESCA	STD	0.0001	0.0001	0.0001	0.0001	0.0001	0.0002
GBM	Mean	0.0043	0.0036	0.0037	0.0042	0.0042	0.0047
GBM	STD	0.0001	0.0001	0.0001	0.0001	0.0001	0.0001
HNSC	Mean	0.0132	0.0115	0.0127	0.0129	0.0132	0.0136
HNSC	STD	0.0001	0.0027	0.0002	0.0015	0.0001	0.0001
KICH	Mean	0.0043	0.0036	0.0037	0.0042	0.0042	0.0047
KICH	STD	0.0001	0.0001	0.0001	0.0001	0.0001	0.0001
KIRC	Mean	0.0107	0.0058	0.0104	0.0112	0.0117	0.0129
KIRC	STD	0.0032	0.0027	0.0030	0.0028	0.0022	0.0001
KIRP	Mean	0.0043	0.0036	0.0037	0.0042	0.0042	0.0047
KIRP	STD	0.0001	0.0001	0.0001	0.0001	0.0001	0.0001
LIHC	Mean	0.0043	0.0036	0.0038	0.0043	0.0042	0.0046
LIHC	STD	0.0001	0.0001	0.0001	0.0001	0.0001	0.0001
LUAD	Mean	0.0129	0.0122	0.0124	0.0129	0.0130	0.0134
LUAD	STD	0.0001	0.0001	0.0002	0.0001	0.0001	0.0001
LUSC	Mean	0.0043	0.0037	0.0039	0.0043	0.0043	0.0048
LUSC	STD	0.0001	0.0001	0.0001	0.0001	0.0001	0.0001
PAAD	Mean	0.0043	0.0036	0.0037	0.0042	0.0042	0.0047
PAAD	STD	0.0001	0.0001	0.0001	0.0001	0.0001	0.0001
PCPG	Mean	0.0043	0.0036	0.0037	0.0042	0.0042	0.0047
PCPG	STD	0.0001	0.0001	0.0001	0.0001	0.0001	0.0001
READ	Mean	0.0043	0.0036	0.0037	0.0042	0.0042	0.0047
READ	STD	0.0001	0.0001	0.0001	0.0001	0.0001	0.0001
SARC	Mean	0.0229	0.0223	0.0224	0.0229	0.0230	0.0233
SARC	STD	0.0001	0.0001	0.0001	0.0001	0.0001	0.0001
SKCM	Mean	0.0043	0.0036	0.0037	0.0042	0.0042	0.0047
SKCM	STD	0.0001	0.0001	0.0001	0.0001	0.0001	0.0001
STAD	Mean	0.0080	0.0043	0.0117	0.0094	0.0084	0.0157
STAD	STD	0.0048	0.0003	0.0048	0.0052	0.0049	0.0001
THCA	Mean	0.0043	0.0036	0.0037	0.0042	0.0042	0.0046
THCA	STD	0.0001	0.0001	0.0001	0.0001	0.0001	0.0001
THYM	Mean	0.0043	0.0036	0.0037	0.0042	0.0042	0.0047
THYM	STD	0.0001	0.0001	0.0001	0.0001	0.0001	0.0001
UCEC	Mean	0.0269	0.0167	0.0256	0.0252	0.0286	0.0367
UCEC	STD	0.0072	0.0119	0.0083	0.0091	0.0045	0.0105
Ranking	\(\text {W\|T\|L}\)	0\|0\|22	0\|0\|22	0\|0\|22	0\|0\|22	0\|0\|22	0\|0\|22

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