Gene selection via improved nuclear reaction optimization algorithm for cancer classification in high-dimensional data

El-Mageed, Amr A. Abd; Elkhouli, Ahmed E.; Abohany, Amr A.; Gafar, Mona

doi:10.1186/s40537-024-00902-z

Journal of Big Data

Table 12 The proposed RBNRO-DE scores with k-NN and its peers in terms of mean values of classification accuracy

From: Gene selection via improved nuclear reaction optimization algorithm for cancer classification in high-dimensional data

Benchmark	Metric	RBNRO-DE	BSSA	BABC	BPSO	BBA	BGWO	BWOA
BLCA	Mean	1.0000	0.9930	0.9977	0.9934	0.9891	0.9950	0.9938
BLCA	STD	0.0000	0.0057	0.0047	0.0058	0.0029	0.0058	0.0058
CESC	Mean	0.9839	0.9839	0.9839	0.9839	0.9839	0.9839	0.9839
CESC	STD	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
CHOL	Mean	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
CHOL	STD	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
COAD	Mean	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
COAD	STD	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
ESCA	Mean	0.9744	0.9744	0.9744	0.9744	0.9744	0.9744	0.9744
ESCA	STD	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
GBM	Mean	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
GBM	STD	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
HNSC	Mean	0.9938	0.9914	0.9914	0.9912	0.9912	0.9917	0.9912
HNSC	STD	0.0041	0.0016	0.0016	0.0000	0.0000	0.0022	0.0000
KICH	Mean	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
KICH	STD	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
KIRC	Mean	0.9983	0.9928	0.9939	0.9923	0.9917	0.9939	0.9923
KIRC	STD	0.0033	0.0028	0.0037	0.0021	0.0000	0.0037	0.0021
KIRP	Mean	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
KIRP	STD	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
LIHC	Mean	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
LIHC	STD	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
LUAD	Mean	0.9913	0.9913	0.9913	0.9913	0.9913	0.9913	0.9913
LUAD	Mean	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
LUSC	STD	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
LUSC	Mean	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
PAAD	STD	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
PAAD	Mean	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
PCPG	STD	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
PCPG	Mean	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
READ	STD	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
READ	Mean	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
SARC	STD	0.9811	0.9811	0.9811	0.9811	0.9811	0.9811	0.9811
SARC	Mean	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
SKCM	STD	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
SKCM	Mean	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
STAD	STD	1.0000	0.9959	0.9985	0.9956	0.9889	0.9963	0.9952
STAD	Mean	0.0000	0.0054	0.0038	0.0054	0.0000	0.0052	0.0055
THCA	Mean	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
THCA	STD	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
THYM	Mean	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
THYM	STD	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
UCEC	Mean	0.9992	0.9850	0.9875	0.9767	0.9692	0.9842	0.9767
UCEC	STD	0.0045	0.0122	0.0125	0.0062	0.0106	0.0120	0.0062
Ranking	\(\text {W\|T\|L}\)	\(\mathbf {1\|20\|1}\)	0\|18\|4	0\|18\|4	0\|18\|4	0\|18\|4	0\|18\|4	0\|18\|4

Benchmark	Metric	BGOA	BSFO	BHHO	BBSA	BASO	BHGSO
BLCA	Mean	0.9930	1.0000	0.9907	0.9942	0.9938	0.9888
BLCA	STD	0.0057	0.0000	0.0047	0.0058	0.0058	0.0021
CESC	Mean	0.9839	0.9839	0.9839	0.9839	0.9839	0.9839
CESC	STD	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
CHOL	Mean	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
CHOL	STD	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
COAD	Mean	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
COAD	STD	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
ESCA	Mean	0.9744	0.9744	0.9744	0.9744	0.9744	0.9744
ESCA	STD	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
GBM	Mean	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
GBM	STD	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
HNSC	Mean	0.9912	0.9923	0.9912	0.9914	0.9912	0.9912
HNSC	STD	0.0000	0.0030	0.0000	0.0016	0.0000	0.0000
KICH	Mean	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
KICH	STD	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
KIRC	Mean	0.9937	0.9986	0.9934	0.9931	0.9926	0.9917
KIRC	STD	0.0035	0.0031	0.0033	0.0031	0.0025	0.0000
KIRP	Mean	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
KIRP	STD	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
LIHC	Mean	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
LIHC	STD	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
LUAD	Mean	0.9913	0.9913	0.9913	0.9913	0.9913	0.9913
LUAD	Mean	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
LUSC	STD	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
LUSC	Mean	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
PAAD	STD	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
PAAD	Mean	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
PCPG	STD	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
PCPG	Mean	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
READ	STD	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
READ	Mean	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
SARC	STD	0.9811	0.9811	0.9811	0.9811	0.9811	0.9811
SARC	Mean	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
SKCM	STD	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
SKCM	Mean	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
STAD	STD	0.9967	1.0000	0.9922	0.9952	0.9963	0.9889
STAD	Mean	0.0051	0.0000	0.0051	0.0055	0.0052	0.0000
THCA	Mean	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
THCA	STD	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
THYM	Mean	1.0000	1.0000	1.0000	1.0000	1.0000	1.0000
THYM	STD	0.0000	0.0000	0.0000	0.0000	0.0000	0.0000
UCEC	Mean	0.9775	0.9875	0.9783	0.9792	0.9758	0.9683
UCEC	STD	0.0075	0.0125	0.0085	0.0093	0.0045	0.0111
Ranking	\(\text {W\|T\|L}\)	0\|18\|4	\(\mathbf {1\|20\|1}\)	0\|18\|4	0\|18\|4	0\|18\|4	0\|18\|4

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